Publications

Citations on Google Scholar.

  • Liu, K., Lowengrub, J., Allard, J., Efficient simulation of thermally fluctuating biopolymers immersed in fluids on 1-micron, 1-second scales. Submitted 2017.
  • Bergman, J. P.†, Bovyn, M. J.†, Gudheti, M. V., Gross, S. P., Allard, J. F., Ver- shinin, M. D., Cargo navigation across 3D microtubule intersections. Submitted 2017. †These authors contributed equally.
  • Raz-Ben Aroush, D., Ofer, N., Abu Shah, E., Allard, J., Krichevsky, O., Mogilner, A., Keren, K., Actin turnover in lamellipodial fragments. Current Biology, in press 2017.
  • Liu, K., Marple, G., Allard, J., Li, S., Veerapaeni, S., Lowengrub, J. Dynamics of a multicomponent vesicle in shear flow. Soft Matter 13, 3521-3531 (2017).

  • Goyette, J., Solis Salas, C., Coker-Gordon, N., Bridge, M., Isaacson, S.A., Allard, J., Dushek, O., A novel surface plasmon resonance assay for tethered enzymatic reactions applied to the tyrosine phosphatase SHP-1. Science Advances 3 e1601692 (2017).
  • Bryant, D., Clemens, L., Allard, J., Computational simulation of formin-mediated actin polymerization predicts homologue-dependent mechanosensitivity. Cytoskeleton 74:29-39 (2017). link.
  • Barnhart, E.*, Allard, J.*, Mogilner, A., Theriot, J., Adhesion-dependent wave generation in crawling cells. Current Biology 27: 27:38 (2017). *E.B. and J.A. contributed equally. link.
  • Iniguez, A., Allard, J., Spatial pattern formation in microtubule post-translational modifications and the tight localization of motor-driven cargo. Journal of Mathematical Biology 74:1059 (2017). Springer link.
  • Liu, K., Hamilton, C., Allard, J., Lowengrub, J., Li, S., Wrinkling Dynamics of Fluctuating Vesicles in Time-dependent Viscous Flow. Soft Matter 12:5663 (2016).
  • Mukhopadhyay, H., de Wet, B., Clemens, L., Maini, P.K., Allard, J., van der Merwe, P.A., Dushek, O., Multisite phosphorylation of the T cell receptor zeta-chain enhances the potency but not the switch-like response. Biophysical Journal 110 pp. 1896–1906 (2016).
  • Manakova, K, Yan, H., Lowengrub, J., Allard, J., Cell surface mechanochemistry and the determinants of bleb formation, healing and travel. Biophysical Journal 110 pp. 1636-1647 (2016).
  • Newby, J., Allard, J., First-passage time to clear the way for receptor-ligand binding in a crowded environment. Physical Review Letters 116, 128101 (2016). preprint.
  • Aland, S., Allard, J., Lowengrub, J., Numerical simulations of endocytosis: Viscous flow driven by membranes with non-uniformly distributed curvature-inducing molecules. Journal of Computational Physics 309 pp. 112-128 (2016).
  • Lewis, O., Guy, R., Allard, J.* Actin-myosin spatial patterns from a simplified isotropic viscoelastic model. Biophysical Journal 107(4) pp. 863-870 (2014). *Corresponding author.
  • Gou, J., Edelstein-Keshet, L., Allard, J.* Mathematical model with spatially uniform regulation explains long-range bidirectional transport of early endosomes in fungal hyphae. Molecular Biology of the Cell 25(16) pp. 2408-2415 (2014). *Corresponding author.
  • Luo, W., Yu, C., Allard, J., Mogilner, A., Sheetz, M., Bershadsky, A., Organization and dynamics of cytoplasmic actin networks. Journal of Cell Biology 202(7) pp.1057-1073 (2013). pdf.
  • Danuser, G., Allard, J., Mogilner, A., Mathematical modeling of eukaryotic cell migration: insights beyond experiments. Annual Reviews in Cell and Developmental Biology 29:18.1 (2013). pdf.
  • Allard, J., Mogilner, A., Traveling waves in actin dynamics and cell motility. Current Opinion in Cell Biology. 25 (2012). pdf.
  • Mogilner, A., Allard, J., Wollman, R. Cell polarity: Quantitative modeling as a tool in cell biology. Science. 336 pp. 175-179 (2012). pdf.
  • Allard, J.F.*, Dushek, O.*, Coombs, D., van der Merwe, P.A., Mechanical modulation of receptor-ligand interactions at cell-cell interfaces. Biophysical Journal. 102 pp. 1265-1273 (2012) *J.F.A and O.D. contributed equally. pdf.
  • Cytrynbaum, E.N., Li, Y., Allard, J.F., Mehrabian, H., Estimating the bending modulus of a FtsZ bacterial-division protein filament. Physical Review E 85, 011902 (2012). pdf.
  • Ambrose, J. C., Allard, J. F., Cytrynbaum, E. N., Wasteneys, G. O. A CLASP-modulated cell edge barrier mechanism drives cell-wide cortical microtubule organization in Arabidopsis. Nature Communications. 2:430 (2011). pdf.
  • Allard, J. F., Ambrose, J. C., Wasteneys, G. O., Cytrynbaum, E. N., Mechanochemical model explains interactions between cortical microtubules in plants. Biophysical Journal. 99 pp. 1082-1090 (2010). pdf.
  • Allard, J. F., Wasteneys, G. O., Cytrynbaum, E. N. Mechanisms of self-organization of cortical microtubules in plants revealed by computational simulation. Molecular Biology of the Cell. 21 pp. 278-286 (2010). pdf.
  • Allard, J. F., Rutenberg, A. D. Pulling helices inside bacteria: Imperfect helices and rings. Physical Review Letters. 102, 158105 (2009). pdf.
  • Allard, J. F., Cytrynbaum, E. N. Force generation by a dynamic Z-ring in Escherichia coli cell division. Proceedings of the National Academy of Science (USA). 106(1) pp. 145-150 (2009). Allard2009PNAS.
  • Allard, J. F., Rutenberg, A. D. Steady-state helices of the actin homolog MreB inside bacteria: Dynamics without motor proteins. Physical Review E. 76, 031916 (2007). Allard2007PRE.
  • Allard, J., Hill, A., Rutenberg, A. Heterocyst patterns without patterning proteins in cyanobacterial filaments. Developmental Biology. 312(1) pp. 427-434 (2007). Allard2007DevBio.
  • Allard, J., Mathematics and biophysics of cortical microtubules in plants, PhD Thesis, University of British Columbia (2010), accessible here.
  • Allard, J., Models of the actin-like MreB helix in bacteria, MSc Thesis, Dalhousie University (2007), accessible here.